8UT0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8UT0_001 | 1/2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8UT0_002 | 1/2/70:81 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_8UT0_003 | 1/2/154:160 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8UT0_004 | 1/2/190:195 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8UT0_005 | 1/2/230:235 | No text annotation | ||
| HL_8UT0_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8UT0_007 | 1/2/276:279 | Mini UNCG | homologous HL_8P9A_196 HL_48778.2 | |
| HL_8UT0_008 | 1/2/330:338 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8UT0_009 | 1/2/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.1 | |
| HL_8UT0_010 | 1/2/393:404 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8UT0_011 | 1/2/414:419 | UNCG | homologous HL_8P9A_200 HL_34617.5 | |
| HL_8UT0_012 | 1/2/450:456 | No text annotation | homologous HL_8P9A_201 HL_48417.5 | |
| HL_8UT0_013 | 1/2/491:496 | No text annotation | ||
| HL_8UT0_014 | 1/2/520:532 | No text annotation | homologous HL_8C3A_205 NA | |
| HL_8UT0_015 | 1/2/569:574 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8UT0_016 | 1/2/764:772 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8UT0_017 | 1/2/777:783 | No text annotation | ||
| HL_8UT0_018 | 1/2/829:843 | Pseudoknot geometry | geometric HL_3IGI_005 HL_93324.4 | |
| HL_8UT0_019 | 1/2/900:909 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8UT0_020 | 1/2/937:942 | GNRA | homologous HL_8P9A_210 HL_37824.7 | |
| HL_8UT0_021 | 1/2/997:1007 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8UT0_022 | 1/2/1055:1064 | No text annotation | ||
| HL_8UT0_023 | 1/2/1084:1089 | GNRA | homologous HL_8P9A_213 HL_37824.7 | |
| HL_8UT0_024 | 1/2/1121:1126 | GNRA | homologous HL_8P9A_214 HL_37824.7 | |
| HL_8UT0_025 | 1/2/1188:1197 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
| HL_8UT0_026 | 1/2/1238:1247 | No text annotation | homologous HL_8P9A_216 HL_81538.2 | |
| HL_8UT0_027 | 1/2/1296:1301 | GNRA | homologous HL_8P9A_217 HL_37824.7 | |
| HL_8UT0_028 | 1/2/1309:1316 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8UT0_029 | 1/2/1359:1364 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8UT0_030 | 1/2/1396:1402 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_8UT0_031 | 1/2/1501:1506 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8UT0_032 | 1/2/1550:1561 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8UT0_033 | 1/2/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_8UT0_034 | 1/2/1698:1703 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8UT0_035 | 1/2/1778:1783 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8UT0_036 | 1/A/38:45 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_8UT0_037 | 1/A/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8UT0_038 | 1/A/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8UT0_039 | 1/A/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8UT0_040 | 1/A/194:201 | No text annotation | homologous HL_8P9A_117 HL_01609.3 | |
| HL_8UT0_041 | 1/A/208:212 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8UT0_042 | 1/A/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8UT0_043 | 1/A/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8UT0_044 | 1/A/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8UT0_045 | 1/A/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8UT0_046 | 1/A/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8UT0_118 | 1/A/544:547 | No text annotation | ||
| HL_8UT0_048 | 1/A/599:604 | GNRA | homologous HL_8P9A_125 HL_37824.7 | |
| HL_8UT0_049 | 1/A/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8UT0_050 | 1/A/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8UT0_051 | 1/A/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8UT0_052 | 1/A/732:737 | GNRA | homologous HL_8P9A_129 HL_37824.7 | |
| HL_8UT0_053 | 1/A/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8UT0_054 | 1/A/844:849 | GNRA | homologous HL_8P9A_131 HL_37824.7 | |
| HL_8UT0_055 | 1/A/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8UT0_056 | 1/A/910:918 | No text annotation | homologous HL_8P9A_133 HL_87553.1 | |
| HL_8UT0_057 | 1/A/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8UT0_058 | 1/A/1023:1029 | GNRA | geometric HL_6CZR_078 NA | |
| HL_8UT0_059 | 1/A/1074:1084 | No text annotation | ||
| HL_8UT0_060 | 1/A/1126:1132 | GNRA | homologous HL_8P9A_137 HL_37824.7 | |
| HL_8UT0_061 | 1/A/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8UT0_062 | 1/A/1234:1254 | No text annotation | ||
| HL_8UT0_063 | 1/A/1267:1274 | No text annotation | ||
| HL_8UT0_064 | 1/A/1347:1357 | No text annotation | ||
| HL_8UT0_065 | 1/A/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8UT0_066 | 1/A/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8UT0_067 | 1/A/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8UT0_068 | 1/A/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8UT0_069 | 1/A/1567:1571 | No text annotation | ||
| HL_8UT0_070 | 1/A/1599:1608 | No text annotation | homologous HL_8P9A_146 HL_81545.2 | |
| HL_8UT0_071 | 1/A/1634:1639 | GNRA | homologous HL_8P9A_147 HL_37824.7 | |
| HL_8UT0_072 | 1/A/1680:1688 | No text annotation | homologous HL_8P9A_148 HL_77082.1 | |
| HL_8UT0_073 | 1/A/1719:1725 | No text annotation | homologous HL_8P9A_149 HL_25967.2 | |
| HL_8UT0_074 | 1/A/1760:1765 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_8UT0_075 | 1/A/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_48778.2 | |
| HL_8UT0_076 | 1/A/1844:1851 | No text annotation | homologous HL_8P9A_152 HL_89567.2 | |
| HL_8UT0_077 | 1/A/1862:1868 | GNRA | homologous HL_8P9A_153 HL_37824.7 | |
| HL_8UT0_078 | 1/A/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8UT0_079 | 1/A/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8UT0_080 | 1/A/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8UT0_081 | 1/A/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8UT0_082 | 1/A/2220:2225 | GNRA | homologous HL_8P9A_159 HL_37824.7 | |
| HL_8UT0_083 | 1/A/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8UT0_084 | 1/A/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8UT0_085 | 1/A/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8UT0_086 | 1/A/2535:2544 | No text annotation | ||
| HL_8UT0_087 | 1/A/2568:2573 | No text annotation | homologous HL_8C3A_054 NA | |
| HL_8UT0_088 | 1/A/2616:2624 | No text annotation | homologous HL_8P9A_165 HL_85367.2 | |
| HL_8UT0_089 | 1/A/2633:2645 | No text annotation | homologous HL_8P9A_166 HL_91939.2 | |
| HL_8UT0_090 | 1/A/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8UT0_091 | 1/A/2693:2700 | Pseudoknot geometry | homologous HL_8P9A_168 HL_93324.4 | |
| HL_8UT0_092 | 1/A/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8UT0_093 | 1/A/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8UT0_094 | 1/A/2776:2784 | Pseudoknot geometry | homologous HL_8P9A_171 HL_93324.4 | |
| HL_8UT0_095 | 1/A/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8UT0_096 | 1/A/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8UT0_097 | 1/A/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_30068.2 | |
| HL_8UT0_098 | 1/A/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8UT0_099 | 1/A/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8UT0_100 | 1/A/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8UT0_101 | 1/A/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8UT0_102 | 1/A/3194:3197 | Mini UNCG | geometric HL_5AH5_007 HL_48778.2 | |
| HL_8UT0_103 | 1/A/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_07886.3 | |
| HL_8UT0_104 | 1/A/3303:3311 | No text annotation | homologous HL_8P9A_181 HL_64690.6 | |
| HL_8UT0_105 | 1/A/3350:3353 | No text annotation | geometric HL_8C3A_004 NA | |
| HL_8UT0_106 | 1/B/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8UT0_107 | 1/B/88:93 | GNRA | homologous HL_8P9A_185 HL_37824.7 | |
| HL_8UT0_108 | 1/C/47:56 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_8UT0_109 | 1/C/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8UT0_110 | 1/C/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8UT0_111 | 1/C/124:129 | No text annotation | homologous HL_8P4V_075 NA | |
| HL_8UT0_112 | 1/m/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_8UT0_113 | 1/m/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 HL_06059.6 | |
| HL_8UT0_114 | 1/m/53:61 | No text annotation | ||
| HL_8UT0_115 | 1/n/13:22 | tRNA D-loop | homologous HL_7MRL_001 HL_20811.4 | |
| HL_8UT0_116 | 1/n/31:39 | No text annotation | homologous HL_9DFC_104 HL_06059.6 | |
| HL_8UT0_117 | 1/n/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UT0_047 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8UT0_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_8P9A_373 IL_61258.15 | |
| IL_8UT0_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8UT0_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8UT0_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8UT0_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_8P9A_377 IL_51454.3 | |
| IL_8UT0_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.4 | |
| IL_8UT0_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8UT0_008 | 1/2/109:112, 1/2/302:305 | No text annotation | homologous IL_8P9A_380 IL_77658.1 | |
| IL_8UT0_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_8P9A_381 IL_82107.4 | |
| IL_8UT0_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_8UT0_011 | 1/2/143:149, 1/2/165:172 | No text annotation | homologous IL_8P9A_383 IL_80604.6 | |
| IL_8UT0_012 | 1/2/150:152, 1/2/162:164 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_8UT0_234 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_8CRE_402 IL_09705.15 | |
| IL_8UT0_014 | 1/2/204:206, 1/2/259:263 | No text annotation | homologous IL_8P9A_386 IL_51387.2 | |
| IL_8UT0_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_8P9A_387 IL_28037.2 | |
| IL_8UT0_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_8P9A_388 IL_31462.6 | |
| IL_8UT0_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_8P9A_389 IL_15698.3 | |
| IL_8UT0_018 | 1/2/275:276, 1/2/279:281 | Single bulged U | homologous IL_8P9A_390 IL_89505.4 | |
| IL_8UT0_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8UT0_020 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8UT0_021 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_8P9A_393 IL_73789.1 | |
| IL_8UT0_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8UT0_023 | 1/2/411:413, 1/2/420:422 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8UT0_024 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8UT0_025 | 1/2/443:447, 1/2/460:461 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8UT0_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_8UT0_027 | 1/2/481:483, 1/2/504:507 | Isolated non-canonical cWW pair | geometric IL_4V88_507 NA | |
| IL_8UT0_028 | 1/2/514:516, 1/2/536:543 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_8UT0_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8UT0_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform | homologous IL_8P9A_401 IL_51454.3 | |
| IL_8UT0_031 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8UT0_032 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_8P9A_403 IL_89505.4 | |
| IL_8UT0_033 | 1/2/562:568, 1/2/575:583 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
| IL_8UT0_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8UT0_035 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8UT0_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8UT0_037 | 1/2/646:648, 1/2/686:688 | No text annotation | homologous IL_8P9A_408 IL_44465.1 | |
| IL_8UT0_038 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8UT0_039 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8UT0_040 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8UT0_041 | 1/2/817:822, 1/2/850:854 | No text annotation | ||
| IL_8UT0_043 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_8UT0_044 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
| IL_8UT0_045 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | homologous IL_8C3A_437 NA | |
| IL_8UT0_046 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8UT0_047 | 1/2/885:888, 1/2/924:927 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
| IL_8UT0_048 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8UT0_049 | 1/2/985:990, 1/2/1014:1016 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8UT0_050 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8UT0_051 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8UT0_052 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8UT0_053 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_8P9A_427 IL_89505.4 | |
| IL_8UT0_054 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_41756.4 | |
| IL_8UT0_055 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8UT0_056 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8UT0_057 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_8P9A_431 IL_63596.11 | |
| IL_8UT0_058 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8UT0_059 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8UT0_060 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8UT0_061 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_8UT0_062 | 1/2/1234:1236, 1/2/1249:1251 | Other IL | homologous IL_8C3A_454 NA | |
| IL_8UT0_063 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8UT0_064 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8UT0_065 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8UT0_066 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10167.6 | |
| IL_8UT0_067 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8UT0_068 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_87907.2 | |
| IL_8UT0_069 | 1/2/1345:1348, 1/2/1377:1380 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_8UT0_070 | 1/2/1352:1354, 1/2/1369:1373 | No text annotation | homologous IL_8C3A_464 NA | |
| IL_8UT0_071 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_8UT0_072 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8UT0_073 | 1/2/1488:1494, 1/2/1513:1518 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_8UT0_074 | 1/2/1495:1498, 1/2/1509:1512 | No text annotation | homologous IL_8P9A_450 IL_77658.1 | |
| IL_8UT0_075 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8UT0_076 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | homologous IL_8P9A_452 IL_61438.4 | |
| IL_8UT0_077 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_8P9A_453 IL_65718.4 | |
| IL_8UT0_078 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8UT0_079 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_8UT0_080 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8UT0_081 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_8P9A_457 IL_09705.15 | |
| IL_8UT0_082 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_8UT0_083 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8UT0_084 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8UT0_085 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_87907.2 | |
| IL_8UT0_086 | 1/2/1675:1678, 1/2/1723:1726 | No text annotation | homologous IL_8P9A_462 IL_77658.1 | |
| IL_8UT0_087 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8UT0_088 | 1/2/1688:1690, 1/2/1711:1713 | No text annotation | ||
| IL_8UT0_089 | 1/2/1693:1695, 1/2/1706:1708 | Stack and bulge | geometric IL_2ET8_001 IL_31737.3 | |
| IL_8UT0_090 | 1/A/7:8, 1/C/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8UT0_091 | 1/A/13:15, 1/C/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8UT0_092 | 1/A/27:28, 1/A/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8UT0_093 | 1/A/31:38, 1/A/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_8UT0_094 | 1/A/82:89, 1/A/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_65594.1 | |
| IL_8UT0_095 | 1/A/123:124, 1/A/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8UT0_096 | 1/A/125:127, 1/A/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8UT0_097 | 1/A/163:166, 1/A/256:258 | Other IL | geometric IL_5TBW_064 NA | |
| IL_8UT0_235 | 1/A/169:170, 1/A/248:253 | No text annotation | ||
| IL_8UT0_099 | 1/A/177:178, 1/A/238:241 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_8UT0_100 | 1/A/189:191, 1/A/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8UT0_101 | 1/A/337:339, 1/C/25:26 | Single bulged A | homologous IL_8P9A_242 IL_31462.6 | |
| IL_8UT0_102 | 1/A/376:379, 1/A/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8UT0_103 | 1/A/404:410, 1/C/13:19 | No text annotation | homologous IL_8P9A_244 IL_04021.2 | |
| IL_8UT0_104 | 1/A/429:431, 1/A/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_07785.1 | |
| IL_8UT0_105 | 1/A/512:513, 1/A/577:579 | Single bulged A | homologous IL_8P9A_246 IL_31462.6 | |
| IL_8UT0_106 | 1/A/517:525, 1/A/567:573 | No text annotation | homologous IL_8P9A_247 IL_58126.1 | |
| IL_8UT0_107 | 1/A/531:538, 1/A/553:561 | No text annotation | homologous IL_8P9A_248 IL_43858.1 | |
| IL_8UT0_108 | 1/A/668:670, 1/A/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8UT0_109 | 1/A/680:684, 1/A/696:700 | No text annotation | homologous IL_8P9A_250 IL_74367.1 | |
| IL_8UT0_110 | 1/A/725:728, 1/A/741:745 | No text annotation | homologous IL_8P9A_251 IL_23774.1 | |
| IL_8UT0_111 | 1/A/752:753, 1/A/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8UT0_112 | 1/A/755:756, 1/A/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8UT0_113 | 1/A/758:763, 1/A/768:773 | No text annotation | homologous IL_8P9A_254 IL_85536.2 | |
| IL_8UT0_114 | 1/A/803:805, 1/A/938:940 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_87907.2 | |
| IL_8UT0_115 | 1/A/805:809, 1/A/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8UT0_116 | 1/A/833:834, 1/A/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8UT0_117 | 1/A/834:838, 1/A/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8UT0_118 | 1/A/869:872, 1/A/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8UT0_119 | 1/A/873:875, 1/A/886:887 | Single bulged U | homologous IL_8P9A_260 IL_89505.4 | |
| IL_8UT0_120 | 1/A/907:909, 1/A/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8UT0_121 | 1/A/954:956, 1/A/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8UT0_122 | 1/A/969:970, 1/A/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8UT0_123 | 1/A/977:982, 1/A/1101:1104 | No text annotation | ||
| IL_8UT0_124 | 1/A/983:985, 1/A/1099:1100 | Single bulged G | homologous IL_8P9A_265 IL_00225.13 | |
| IL_8UT0_125 | 1/A/991:997, 1/A/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_29198.2 | |
| IL_8UT0_126 | 1/A/997:998, 1/A/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8UT0_127 | 1/A/999:1004, 1/A/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8UT0_128 | 1/A/1006:1009, 1/A/1041:1044 | No text annotation | homologous IL_8P9A_269 IL_77658.1 | |
| IL_8UT0_129 | 1/A/1009:1011, 1/A/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
| IL_8UT0_130 | 1/A/1014:1019, 1/A/1033:1036 | No text annotation | ||
| IL_8UT0_131 | 1/A/1069:1071, 1/A/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8UT0_132 | 1/A/1120:1122, 1/A/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8UT0_134 | 1/A/1167:1171, 1/A/1328:1332 | UAA/GAN | homologous IL_8P9A_276 IL_38507.2 | |
| IL_8UT0_135 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_41203.4 | |
| IL_8UT0_136 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_89505.4 | |
| IL_8UT0_137 | 1/A/1187:1194, 1/A/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8UT0_138 | 1/A/1194:1205, 1/A/1299:1314 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_8UT0_139 | 1/A/1207:1209, 1/A/1296:1297 | Single bulged U | homologous IL_8P9A_281 IL_89505.4 | |
| IL_8UT0_140 | 1/A/1218:1226, 1/A/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8UT0_141 | 1/A/1262:1266, 1/A/1275:1277 | No text annotation | homologous IL_8P9A_284 IL_51387.2 | |
| IL_8UT0_142 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8UT0_143 | 1/A/1385:1387, 1/A/1420:1421 | Single bulged A | homologous IL_8P9A_286 IL_31462.6 | |
| IL_8UT0_144 | 1/A/1388:1395, 1/A/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8UT0_145 | 1/A/1398:1400, 1/A/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_31462.6 | |
| IL_8UT0_146 | 1/A/1444:1450, 1/A/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8UT0_147 | 1/A/1501:1505, 1/A/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_8UT0_148 | 1/A/1532:1536, 1/A/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8UT0_149 | 1/A/1563:1566, 1/A/1572:1576 | No text annotation | ||
| IL_8UT0_150 | 1/A/1618:1621, 1/A/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8UT0_151 | 1/A/1623:1624, 1/A/1820:1822 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8UT0_152 | 1/A/1625:1627, 1/A/1816:1819 | No text annotation | ||
| IL_8UT0_153 | 1/A/1627:1631, 1/A/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_8UT0_154 | 1/A/1645:1649, 1/A/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8UT0_155 | 1/A/1661:1663, 1/A/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8UT0_156 | 1/A/1669:1670, 1/A/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_61258.15 | |
| IL_8UT0_157 | 1/A/1670:1671, 1/A/1776:1778 | Single stack bend | homologous IL_8P9A_298 IL_90729.1 | |
| IL_8UT0_158 | 1/A/1694:1698, 1/A/1747:1752 | No text annotation | homologous IL_8P9A_299 IL_00981.1 | |
| IL_8UT0_159 | 1/A/1702:1707, 1/A/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_23038.1 | |
| IL_8UT0_160 | 1/A/1711:1717, 1/A/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
| IL_8UT0_161 | 1/A/1883:1889, 1/A/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8UT0_162 | 1/A/1895:1897, 1/A/2338:2340 | No text annotation | homologous IL_8P9A_303 IL_67095.2 | |
| IL_8UT0_163 | 1/A/1898:1901, 1/A/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8UT0_164 | 1/A/1898:1906, 1/A/2333:2337 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8UT0_165 | 1/A/1901:1906, 1/A/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8UT0_166 | 1/A/1918:1923, 1/A/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8UT0_167 | 1/A/1940:1942, 1/A/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8UT0_168 | 1/A/1947:1948, 1/A/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_73355.1 | |
| IL_8UT0_169 | 1/A/2128:2129, 1/A/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8UT0_170 | 1/A/2156:2161, 1/A/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8UT0_171 | 1/A/2196:2199, 1/A/2245:2246 | Minor groove platform, major groove intercalation | homologous IL_8P9A_312 IL_95583.2 | |
| IL_8UT0_172 | 1/A/2200:2201, 1/A/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8UT0_173 | 1/A/2204:2210, 1/A/2235:2238 | No text annotation | ||
| IL_8UT0_174 | 1/A/2211:2217, 1/A/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8UT0_175 | 1/A/2276:2277, 1/A/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8UT0_176 | 1/A/2277:2288, 1/A/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8UT0_177 | 1/A/2391:2394, 1/A/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
| IL_8UT0_178 | 1/A/2396:2398, 1/A/2981:2984 | No text annotation | homologous IL_8P9A_320 IL_83389.2 | |
| IL_8UT0_179 | 1/A/2409:2411, 1/A/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8UT0_180 | 1/A/2412:2413, 1/A/2807:2810 | Minor groove platform | homologous IL_8P9A_322 IL_51454.3 | |
| IL_8UT0_181 | 1/A/2423:2425, 1/A/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8UT0_182 | 1/A/2444:2445, 1/A/2501:2503 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_8UT0_183 | 1/A/2520:2526, 1/A/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8UT0_184 | 1/A/2614:2615, 1/A/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_31462.6 | |
| IL_8UT0_185 | 1/A/2666:2668, 1/A/2686:2690 | No text annotation | homologous IL_8P9A_326 IL_61476.2 | |
| IL_8UT0_186 | 1/A/2718:2721, 1/A/2735:2738 | No text annotation | homologous IL_8P9A_327 IL_85033.2 | |
| IL_8UT0_187 | 1/A/2770:2773, 1/A/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_8UT0_188 | 1/A/2823:2824, 1/A/2865:2867 | Major groove platform | homologous IL_8P9A_329 IL_48076.6 | |
| IL_8UT0_189 | 1/A/2824:2826, 1/A/2863:2865 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_87907.2 | |
| IL_8UT0_190 | 1/A/2826:2828, 1/A/2862:2863 | No text annotation | homologous IL_8P9A_331 IL_07039.3 | |
| IL_8UT0_191 | 1/A/2828:2830, 1/A/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8UT0_192 | 1/A/2835:2839, 1/A/2849:2853 | No text annotation | homologous IL_8P9A_333 IL_17948.2 | |
| IL_8UT0_193 | 1/A/2876:2877, 1/A/2949:2951 | No text annotation | homologous IL_8P9A_334 IL_07039.3 | |
| IL_8UT0_194 | 1/A/2879:2881, 1/A/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8UT0_195 | 1/A/2881:2882, 1/A/2940:2943 | No text annotation | homologous IL_8P9A_336 IL_42626.2 | |
| IL_8UT0_196 | 1/A/2889:2891, 1/A/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8C3A_118 NA | |
| IL_8UT0_197 | 1/A/2889:2892, 1/A/2909:2914 | No text annotation | geometric IL_5TBW_475 NA | |
| IL_8UT0_198 | 1/A/2891:2892, 1/A/2909:2912 | No text annotation | homologous IL_8P9A_339 IL_02555.1 | |
| IL_8UT0_199 | 1/A/2918:2920, 1/A/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_87907.2 | |
| IL_8UT0_200 | 1/A/2960:2961, 1/A/2970:2972 | Single bulged A | geometric IL_5TBW_060 NA | |
| IL_8UT0_201 | 1/A/3004:3007, 1/A/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_09705.15 | |
| IL_8UT0_202 | 1/A/3012:3014, 1/A/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8UT0_203 | 1/A/3018:3025, 1/A/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_04346.10 | |
| IL_8UT0_204 | 1/A/3047:3051, 1/A/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8UT0_205 | 1/A/3054:3059, 1/A/3084:3088 | No text annotation | homologous IL_8P9A_346 IL_21001.1 | |
| IL_8UT0_206 | 1/A/3063:3064, 1/A/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8UT0_207 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8UT0_208 | 1/A/3164:3166, 1/A/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8UT0_209 | 1/A/3168:3170, 1/A/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
| IL_8UT0_210 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_31462.6 | |
| IL_8UT0_211 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_8UT0_212 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8UT0_213 | 1/A/3225:3229, 1/A/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8UT0_214 | 1/A/3233:3235, 1/A/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_87907.2 | |
| IL_8UT0_215 | 1/A/3235:3238, 1/A/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_8C3A_134 NA | |
| IL_8UT0_216 | 1/A/3300:3303, 1/A/3311:3314 | No text annotation | homologous IL_8P9A_356 IL_77658.1 | |
| IL_8UT0_217 | 1/A/3318:3320, 1/A/3387:3388 | Single bulged U | homologous IL_8P9A_357 IL_89505.4 | |
| IL_8UT0_218 | 1/A/3324:3325, 1/A/3381:3383 | Single bulged U | homologous IL_8P9A_358 IL_89505.4 | |
| IL_8UT0_219 | 1/A/3328:3330, 1/A/3373:3378 | No text annotation | homologous IL_8P9A_359 IL_43622.1 | |
| IL_8UT0_220 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8UT0_221 | 1/A/3340:3342, 1/A/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8UT0_222 | 1/A/3342:3345, 1/A/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8UT0_223 | 1/A/3349:3350, 1/A/3353:3356 | Multiple bulged bases | homologous IL_8P9A_363 IL_84476.1 | |
| IL_8UT0_224 | 1/B/15:16, 1/B/63:65 | Single bulged A | homologous IL_8P9A_364 IL_31462.6 | |
| IL_8UT0_225 | 1/B/21:27, 1/B/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8UT0_226 | 1/B/28:29, 1/B/49:52 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
| IL_8UT0_227 | 1/B/29:30, 1/B/47:49 | Single stack bend | homologous IL_8P9A_367 IL_90729.1 | |
| IL_8UT0_228 | 1/B/32:36, 1/B/41:45 | No text annotation | homologous IL_8P9A_368 IL_58103.11 | |
| IL_8UT0_229 | 1/B/72:80, 1/B/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_04346.10 | |
| IL_8UT0_230 | 1/B/84:87, 1/B/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8UT0_231 | 1/C/64:66, 1/C/93:96 | No text annotation | homologous IL_8P9A_371 IL_07785.1 | |
| IL_8UT0_232 | 1/C/68:69, 1/C/89:91 | Single bulged U | homologous IL_8P9A_372 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UT0_013 | Triple sheared | ||
| IL_8UT0_042 | Isolated cWH basepair | ||
| IL_8UT0_098 | No text annotation | ||
| IL_8UT0_133 | No text annotation | ||
| IL_8UT0_233 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8UT0_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8UT0_002 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8UT0_003 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_8UT0_004 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8UT0_005 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8UT0_006 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_8UT0_007 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_8UT0_008 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_8P9A_075 J3_94999.1 | |
| J3_8UT0_009 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8UT0_010 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8UT0_011 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8UT0_012 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8UT0_013 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_8UT0_014 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_8UT0_015 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | geometric J3_4V88_040 NA | |
| J3_8UT0_016 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8UT0_017 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8UT0_018 | 1/A/113:123, 1/A/149:158, 1/A/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_8UT0_019 | 1/A/113:124, 1/A/144:158, 1/A/263:267 | No text annotation | ||
| J3_8UT0_020 | 1/A/185:189, 1/A/205:214, 1/A/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_8UT0_021 | 1/A/340:356, 1/A/363:368, 1/C/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8UT0_022 | 1/A/369:376, 1/A/403:404, 1/C/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8UT0_023 | 1/A/369:379, 1/A/390:404, 1/C/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_8UT0_024 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_8UT0_025 | 1/A/814:820, 1/A/905:907, 1/A/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8UT0_026 | 1/A/828:831, 1/A/863:867, 1/A/892:897 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8UT0_027 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_8UT0_028 | 1/A/1230:1232, 1/A/1256:1262, 1/A/1277:1279 | No text annotation | homologous J3_8P9A_052 J3_28621.5 | |
| J3_8UT0_029 | 1/A/1479:1485, 1/A/1857:1859, 1/A/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8UT0_030 | 1/A/1488:1491, 1/A/1837:1843, 1/A/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_19545.2 | |
| J3_8UT0_031 | 1/A/1526:1531, 1/A/1591:1595, 1/A/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8UT0_032 | 1/A/1537:1542, 1/A/1551:1560, 1/A/1579:1584 | No text annotation | ||
| J3_8UT0_033 | 1/A/1631:1632, 1/A/1641:1645, 1/A/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8UT0_034 | 1/A/1654:1658, 1/A/1791:1792, 1/A/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8UT0_035 | 1/A/2432:2435, 1/A/2512:2517, 1/A/2590:2597 | No text annotation | homologous J3_8P9A_059 J3_84052.1 | |
| J3_8UT0_036 | 1/A/2529:2532, 1/A/2547:2563, 1/A/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8UT0_037 | 1/A/2651:2653, 1/A/2754:2765, 1/A/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8UT0_038 | 1/A/2664:2666, 1/A/2690:2692, 1/A/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_61124.2 | |
| J3_8UT0_039 | 1/A/2886:2889, 1/A/2914:2916, 1/A/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8UT0_040 | 1/A/3171:3176, 1/A/3212:3220, 1/A/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8UT0_041 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8UT0_042 | 1/B/9:14, 1/B/66:67, 1/B/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8UT0_043 | 1/C/44:45, 1/C/58:64, 1/C/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_8UT0_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8UT0_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8UT0_003 | 1/A/112:113, 1/A/267:272, 1/A/293:299, 1/A/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8UT0_004 | 1/A/185:189, 1/A/205:208, 1/A/212:214, 1/A/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_8UT0_005 | 1/A/1451:1457, 1/A/1475:1476, 1/A/1877:1880, 1/A/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8UT0_006 | 1/A/1492:1496, 1/A/1520:1525, 1/A/1614:1615, 1/A/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_8UT0_007 | 1/A/1674:1675, 1/A/1693:1694, 1/A/1752:1753, 1/A/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_8UT0_008 | 1/A/2130:2134, 1/A/2146:2150, 1/A/2186:2190, 1/A/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_8UT0_009 | 1/A/2192:2194, 1/A/2248:2249, 1/A/2267:2276, 1/A/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8UT0_014 | 1/A/2654:2658, 1/A/2712:2716, 1/A/2740:2742, 1/A/2751:2753 | No text annotation | homologous J4_8CRE_008 J4_04930.6 | |
| J4_8UT0_011 | 1/A/3010:3012, 1/A/3042:3043, 1/A/3098:3100, 1/A/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_8UT0_012 | 1/m/7:10, 1/m/25:26, 1/m/44:49, 1/m/65:66 | tRNA junction | homologous J4_4QEI_001 J4_72305.5 | |
| J4_8UT0_013 | 1/n/7:11, 1/n/24:27, 1/n/43:49, 1/n/65:66 | No text annotation | ||
| J5_8UT0_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8UT0_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8UT0_012 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_8UT0_013 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_8UT0_005 | 1/2/636:641, 1/2/693:699, 1/2/739:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_8UT0_006 | 1/A/20:22, 1/C/35:42, 1/C/102:107, 1/C/115:116, 1/C/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_8UT0_007 | 1/A/658:663, 1/A/799:802, 1/A/941:944, 1/A/1375:1376, 1/A/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8UT0_008 | 1/A/675:678, 1/A/702:706, 1/A/713:721, 1/A/749:751, 1/A/782:787 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_8UT0_009 | 1/A/1906:1914, 1/A/1938:1939, 1/A/2109:2110, 1/A/2114:2122, 1/A/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_8UT0_010 | 1/A/2399:2406, 1/A/2815:2823, 1/A/2867:2876, 1/A/2951:2957, 1/A/2975:2980 | No text annotation | ||
| J5_8UT0_011 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2651, 1/A/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_8UT0_001 | 1/A/22:27, 1/A/58:68, 1/A/75:79, 1/A/106:110, 1/A/321:331, 1/C/32:35 | No text annotation | ||
| J7_8UT0_001 | 1/A/949:954, 1/A/967:968, 1/A/1114:1117, 1/A/1141:1146, 1/A/1157:1161, 1/A/1338:1339, 1/A/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_8UT0_010 | No text annotation | ||
| J5_8UT0_003 | No text annotation | ||
| J5_8UT0_004 | No text annotation |
Coloring options: