HL_8UT0_018

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_018 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.3442

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8UT0|1|2|A|829
8UT0|1|2|U|830
8UT0|1|2|U|831
8UT0|1|2|U|832
8UT0|1|2|U|833
8UT0|1|2|G|834
8UT0|1|2|U|835
8UT0|1|2|U|836
8UT0|1|2|G|837
8UT0|1|2|G|838
8UT0|1|2|U|839
8UT0|1|2|U|840
8UT0|1|2|U|841
8UT0|1|2|C|842
8UT0|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S11-A