HL_8UT0_020

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_020 not in the Motif Atlas

Homologous match to HL_8P9A_210

Geometric discrepancy: 0.0756

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UT0|1|2|C|937
8UT0|1|2|G|938
8UT0|1|2|A|939
8UT0|1|2|A|940
8UT0|1|2|A|941
8UT0|1|2|G|942

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

40S ribosomal protein S13

Chain Se

40S ribosomal protein S26-B