3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_020 not in the Motif Atlas
Homologous match to HL_8P9A_210
Geometric discrepancy: 0.0756
The information below is about HL_8P9A_210
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8UT0|1|2|C|937
8UT0|1|2|G|938
8UT0|1|2|A|939
8UT0|1|2|A|940
8UT0|1|2|A|941
8UT0|1|2|G|942

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SY
40S ribosomal protein S13
Chain Se
40S ribosomal protein S26-B

Coloring options:


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