HL_8UT0_026

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8UT0|1|2|G|1243, 8UT0|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_026 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2283

The information below is about HL_8P9A_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UT0|1|2|A|1238
8UT0|1|2|U|1239
8UT0|1|2|U|1240
8UT0|1|2|G|1241
8UT0|1|2|A|1242
8UT0|1|2|G|1243
8UT0|1|2|A|1244
8UT0|1|2|G|1245
8UT0|1|2|C|1246
8UT0|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S15

Chain SM

40S ribosomal protein S29-A

Chain SN

40S ribosomal protein S31