3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
GAAGCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_068 not in the Motif Atlas
Homologous match to HL_8C3A_033
Geometric discrepancy: 0.0885
The information below is about HL_8C3A_033
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8UT0|1|A|G|1544
8UT0|1|A|A|1545
8UT0|1|A|A|1546
8UT0|1|A|G|1547
8UT0|1|A|C|1548
8UT0|1|A|U|1549

Current chains

Chain A
25S rRNA

Nearby chains

Chain LP
60S ribosomal protein L15-A
Chain Ll
60S ribosomal protein L37-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2227 s