HL_8UT0_072

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8UT0|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_072 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1479

The information below is about HL_8P9A_148

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8UT0|1|A|G|1680
8UT0|1|A|U|1681
8UT0|1|A|U|1682
8UT0|1|A|A|1683
8UT0|1|A|U|1684
8UT0|1|A|C|1685
8UT0|1|A|U|1686
8UT0|1|A|U|1687
8UT0|1|A|U|1688

Current chains

Chain A

25S rRNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LW

60S ribosomal protein L22-A