HL_8UT0_085

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8UT0|1|A|A|2372, 8UT0|1|A|A|2373, 8UT0|1|A|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_085 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0988

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8UT0|1|A|G|2369
8UT0|1|A|G|2370
8UT0|1|A|G|2371
8UT0|1|A|A|2372
8UT0|1|A|A|2373
8UT0|1|A|C|2374
8UT0|1|A|G|2375
8UT0|1|A|G|2376
8UT0|1|A|G|2377
8UT0|1|A|C|2378

Current chains

Chain A

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lg

60S ribosomal protein L32