3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
8UT0|1|A|G|3116, 8UT0|1|A|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_101 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.0981
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

8UT0|1|A|C|3110
8UT0|1|A|U|3111
8UT0|1|A|G|3112
8UT0|1|A|A|3113
8UT0|1|A|A|3114
8UT0|1|A|C|3115
8UT0|1|A|G|3116
8UT0|1|A|C|3117
8UT0|1|A|C|3118
8UT0|1|A|U|3119
8UT0|1|A|C|3120
8UT0|1|A|U|3121
8UT0|1|A|A|3122
8UT0|1|A|A|3123
8UT0|1|A|G|3124

Current chains

Chain A
25S rRNA

Nearby chains

Chain LK
60S ribosomal protein L9-A
Chain LQ
60S ribosomal protein L16-A
Chain Lo
60S ribosomal protein L40-A

Coloring options:


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