HL_8UT0_103

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8UT0|1|A|A|3243, 8UT0|1|A|A|3244, 8UT0|1|A|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_103 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.1073

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8UT0|1|A|C|3240
8UT0|1|A|G|3241
8UT0|1|A|G|3242
8UT0|1|A|A|3243
8UT0|1|A|A|3244
8UT0|1|A|A|3245
8UT0|1|A|G|3246
8UT0|1|A|G|3247

Current chains

Chain A

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A