3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CGGAAAGG
Length
8 nucleotides
Bulged bases
8UT0|1|A|A|3243, 8UT0|1|A|A|3244, 8UT0|1|A|G|3246
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UT0_103 not in the Motif Atlas
Homologous match to HL_8P9A_180
Geometric discrepancy: 0.1073
The information below is about HL_8P9A_180
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_07886.3
Basepair signature
cWW-F-F-F
Number of instances in this motif group
6

Unit IDs

8UT0|1|A|C|3240
8UT0|1|A|G|3241
8UT0|1|A|G|3242
8UT0|1|A|A|3243
8UT0|1|A|A|3244
8UT0|1|A|A|3245
8UT0|1|A|G|3246
8UT0|1|A|G|3247

Current chains

Chain A
25S rRNA

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LQ
60S ribosomal protein L16-A

Coloring options:


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