HL_8UT0_111

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8UT0|1|C|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_111 not in the Motif Atlas

Homologous match to HL_8P4V_075

Geometric discrepancy: 0.3483

The information below is about HL_8P4V_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8UT0|1|C|G|124
8UT0|1|C|U|125
8UT0|1|C|A|126
8UT0|1|C|U|127
8UT0|1|C|U|128
8UT0|1|C|C|129

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LZ

60S ribosomal protein L25