HL_8UT0_112

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

8UT0|1|m|U|17, 8UT0|1|m|G|18, 8UT0|1|m|G|19, 8UT0|1|m|U|20, 8UT0|1|m|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_112 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1851

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UT0|1|m|C|13
8UT0|1|m|A|14
8UT0|1|m|G|15
8UT0|1|m|U|16
8UT0|1|m|U|17
8UT0|1|m|G|18
8UT0|1|m|G|19
8UT0|1|m|U|20
8UT0|1|m|A|21
8UT0|1|m|G|22

Current chains

Chain m

A site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA