HL_8UT0_115
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CAGUGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8UT0|1|n|U|16, 8UT0|1|n|G|18, 8UT0|1|n|G|19, 8UT0|1|n|A|20, 8UT0|1|n|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UT0_115 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.1654
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8UT0|1|n|C|13
8UT0|1|n|A|14
8UT0|1|n|G|15
8UT0|1|n|U|16
8UT0|1|n|G|18
8UT0|1|n|G|19
8UT0|1|n|A|20
8UT0|1|n|A|21
8UT0|1|n|G|22
Current chains
- Chain n
- P site initiator tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- 60S ribosomal protein L11-B
- Chain Lq
- 60S ribosomal protein L42-A
- Chain Ls
- Translation factor eIF5A
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