HL_8UT0_117

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UT0_117 not in the Motif Atlas

Homologous match to HL_1U0B_003

Geometric discrepancy: 0.1998

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8UT0|1|n|G|53
8UT0|1|n|A|54
8UT0|1|n|U|55
8UT0|1|n|C|56
8UT0|1|n|G|57
8UT0|1|n|A|58
8UT0|1|n|A|59
8UT0|1|n|A|60
8UT0|1|n|C|61

Current chains

Chain n

P site initiator tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LM

60S ribosomal protein L11-B

Chain Lq

60S ribosomal protein L42-A