HL_8UTG_002

3D structure

PDB id

8UTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

An RNA G-Quadruplex from the NS5 gene in the West Nile Virus Genome

Experimental method

X-RAY DIFFRACTION

Resolution

1.97 Å

Loop

Sequence

GAGGCGGUUGGU

Length

12 nucleotides

Bulged bases

8UTG|1|B|A|9, 8UTG|1|B|C|12, 8UTG|1|B|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50851.1

Basepair signature

cWW-cWH-cWH-cWH-cWH-F

Number of instances in this motif group

1

Unit IDs

8UTG|1|B|G|8
8UTG|1|B|A|9
8UTG|1|B|G|10
8UTG|1|B|G|11
8UTG|1|B|C|12
8UTG|1|B|G|13
8UTG|1|B|G|14
8UTG|1|B|U|15
8UTG|1|B|U|16
8UTG|1|B|G|17
8UTG|1|B|G|18
8UTG|1|B|U|19

Current chains

Chain B

RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3')

Nearby chains

Chain A

RNA (5'-R(*UP*AP*UP*GP*GP*AP*AP*GP*AP*GP*GP*CP*GP*GP*UP*UP*GP*GP*UP*AP*U)-3')