HL_8UTJ_090

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

8UTJ|1|2|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTJ_090 not in the Motif Atlas

Geometric match to HL_5J7L_021

Geometric discrepancy: 0.1754

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UTJ|1|2|G|963
8UTJ|1|2|A|964
8UTJ|1|2|U|965
8UTJ|1|2|2MG|966
8UTJ|1|2|5MC|967
8UTJ|1|2|A|968
8UTJ|1|2|A|969
8UTJ|1|2|C|970
8UTJ|1|2|G|971
8UTJ|1|2|C|972

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

Small ribosomal subunit protein uS9

Chain o

Small ribosomal subunit protein uS10

Chain r

30S ribosomal protein S13