HL_8UU4_007

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAAAAU

Length

6 nucleotides

Bulged bases

8UU4|1|A|A|230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.2319

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

8UU4|1|A|A|227
8UU4|1|A|A|228
8UU4|1|A|A|229
8UU4|1|A|A|230
8UU4|1|A|A|231
8UU4|1|A|U|232

Current chains

Chain A

23S Ribosomal RNA

Nearby chains