HL_8UU4_014

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8UU4|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_014 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1069

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UU4|1|A|G|456
8UU4|1|A|G|457
8UU4|1|A|A|458
8UU4|1|A|C|459
8UU4|1|A|C|460
8UU4|1|A|A|461
8UU4|1|A|U|462
8UU4|1|A|C|463

Current chains

Chain A

23S Ribosomal RNA

Nearby chains