HL_8UU4_053

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8UU4|1|A|A|2301, 8UU4|1|A|C|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0863

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8UU4|1|A|C|2297
8UU4|1|A|U|2298
8UU4|1|A|A|2299
8UU4|1|A|A|2300
8UU4|1|A|A|2301
8UU4|1|A|G|2302
8UU4|1|A|A|2303
8UU4|1|A|G|2304
8UU4|1|A|U|2305
8UU4|1|A|A|2306
8UU4|1|A|A|2307
8UU4|1|A|C|2308
8UU4|1|A|G|2309

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16

Chain Y

Large ribosomal subunit protein bL27