3D structure

PDB id
8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGUAGUCG
Length
8 nucleotides
Bulged bases
8UU4|1|A|G|2562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UU4_060 not in the Motif Atlas
Homologous match to HL_5J7L_194
Geometric discrepancy: 0.1282
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

8UU4|1|A|U|2561
8UU4|1|A|G|2562
8UU4|1|A|U|2563
8UU4|1|A|A|2564
8UU4|1|A|G|2565
8UU4|1|A|U|2566
8UU4|1|A|C|2567
8UU4|1|A|G|2568

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
Large ribosomal subunit protein bL36
Chain G
Large ribosomal subunit protein uL6

Coloring options:


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