HL_8UU4_060
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUAGUCG
- Length
- 8 nucleotides
- Bulged bases
- 8UU4|1|A|G|2562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU4_060 not in the Motif Atlas
- Homologous match to HL_5J7L_194
- Geometric discrepancy: 0.1282
- The information below is about HL_5J7L_194
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
8UU4|1|A|U|2561
8UU4|1|A|G|2562
8UU4|1|A|U|2563
8UU4|1|A|A|2564
8UU4|1|A|G|2565
8UU4|1|A|U|2566
8UU4|1|A|C|2567
8UU4|1|A|G|2568
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36
- Chain G
- Large ribosomal subunit protein uL6
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