HL_8UU4_065

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UU4|1|A|G|2784, 8UU4|1|A|C|2788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1101

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UU4|1|A|C|2778
8UU4|1|A|U|2779
8UU4|1|A|G|2780
8UU4|1|A|A|2781
8UU4|1|A|A|2782
8UU4|1|A|A|2783
8UU4|1|A|G|2784
8UU4|1|A|C|2785
8UU4|1|A|A|2786
8UU4|1|A|U|2787
8UU4|1|A|C|2788
8UU4|1|A|U|2789
8UU4|1|A|A|2790
8UU4|1|A|A|2791
8UU4|1|A|G|2792

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6