HL_8UU4_074

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_074 not in the Motif Atlas

Geometric match to HL_1L9A_001

Geometric discrepancy: 0.3677

The information below is about HL_1L9A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UU4|1|a|C|192
8UU4|1|a|G|193
8UU4|1|a|C|194
8UU4|1|a|A|195
8UU4|1|a|U|196
8UU4|1|a|G|197

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17