HL_8UU5_004

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAGUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2394

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8UU5|1|A|U|136
8UU5|1|A|U|137
8UU5|1|A|U|138
8UU5|1|A|A|139
8UU5|1|A|G|140
8UU5|1|A|U|141
8UU5|1|A|C|142
8UU5|1|A|G|143

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23