3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUUGUAGAA
Length
10 nucleotides
Bulged bases
8UU5|1|A|A|617
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UU5_018 not in the Motif Atlas
Homologous match to HL_4WF9_018
Geometric discrepancy: 0.0963
The information below is about HL_4WF9_018
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

8UU5|1|A|U|609
8UU5|1|A|U|610
8UU5|1|A|U|611
8UU5|1|A|U|612
8UU5|1|A|G|613
8UU5|1|A|U|614
8UU5|1|A|A|615
8UU5|1|A|G|616
8UU5|1|A|A|617
8UU5|1|A|A|618

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 4
Large ribosomal subunit protein bL32
Chain D
Large ribosomal subunit protein uL3
Chain N
Large ribosomal subunit protein uL15
Chain S
Large ribosomal subunit protein bL20
Chain T
Large ribosomal subunit protein bL21

Coloring options:


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