HL_8UU5_106
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU5_106 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.2318
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
8UU5|1|x|A|31
8UU5|1|x|PSU|32
8UU5|1|x|U|33
8UU5|1|x|G|34
8UU5|1|x|A|35
8UU5|1|x|A|36
8UU5|1|x|MIA|37
8UU5|1|x|A|38
8UU5|1|x|PSU|39
Current chains
- Chain x
- pe/E Hybrid State Phenylalanine tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- Small ribosomal subunit protein uS9
- Chain k
- Small ribosomal subunit protein uS11
- Chain w
- F-Stop mRNA
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