HL_8UU6_049

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCUAG

Length

6 nucleotides

Bulged bases

8UU6|1|A|C|2178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_049 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.2692

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8UU6|1|A|C|2176
8UU6|1|A|G|2177
8UU6|1|A|C|2178
8UU6|1|A|U|2179
8UU6|1|A|A|2180
8UU6|1|A|G|2181

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7