HL_8UU6_071

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAACGAACGGAAGUUAGUG

Length

20 nucleotides

Bulged bases

8UU6|1|a|A|65, 8UU6|1|a|U|98

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_071 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.353

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8UU6|1|a|C|63
8UU6|1|a|G|64
8UU6|1|a|A|65
8UU6|1|a|A|66
8UU6|1|a|C|67
8UU6|1|a|G|68
8UU6|1|a|A|69
8UU6|1|a|A|70
8UU6|1|a|C|71
8UU6|1|a|G|72
8UU6|1|a|G|73
8UU6|1|a|A|94
8UU6|1|a|A|95
8UU6|1|a|G|96
8UU6|1|a|U|97
8UU6|1|a|U|98
8UU6|1|a|A|99
8UU6|1|a|G|100
8UU6|1|a|U|101
8UU6|1|a|G|102

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20