HL_8UU6_074

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_074 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2113

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.2

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

8UU6|1|a|U|217
8UU6|1|a|U|218
8UU6|1|a|U|219
8UU6|1|a|C|220
8UU6|1|a|G|221
8UU6|1|a|G|222

Current chains

Chain a

16S Ribosomal RNA

Nearby chains