HL_8UU6_075

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

8UU6|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2497

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UU6|1|a|G|267
8UU6|1|a|G|268
8UU6|1|a|U|269
8UU6|1|a|A|270
8UU6|1|a|A|271
8UU6|1|a|U|272
8UU6|1|a|G|273
8UU6|1|a|G|274
8UU6|1|a|C|275

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20