HL_8UU6_076

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_076 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0947

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UU6|1|a|U|304
8UU6|1|a|G|305
8UU6|1|a|A|306
8UU6|1|a|G|307
8UU6|1|a|A|308
8UU6|1|a|G|309

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein uS5

Chain q

Small ribosomal subunit protein uS17