HL_8UU6_077

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1287

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UU6|1|a|G|328
8UU6|1|a|A|329
8UU6|1|a|C|330
8UU6|1|a|U|331
8UU6|1|a|G|332
8UU6|1|a|A|333
8UU6|1|a|G|334
8UU6|1|a|A|335
8UU6|1|a|C|336
8UU6|1|a|A|337
8UU6|1|a|C|338
8UU6|1|a|G|339
8UU6|1|a|G|340
8UU6|1|a|C|341

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20