HL_8UU6_093

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8UU6|1|a|G|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_093 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1863

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8UU6|1|a|G|1098
8UU6|1|a|U|1099
8UU6|1|a|U|1100
8UU6|1|a|A|1101
8UU6|1|a|A|1102
8UU6|1|a|G|1103
8UU6|1|a|U|1104
8UU6|1|a|C|1105

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7