HL_8UU7_010

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8UU7|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_010 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1218

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8UU7|1|A|C|348
8UU7|1|A|U|349
8UU7|1|A|G|350
8UU7|1|A|G|351
8UU7|1|A|A|352
8UU7|1|A|A|353
8UU7|1|A|A|354
8UU7|1|A|G|355

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL24