HL_8UU7_014

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8UU7|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_014 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1432

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UU7|1|A|G|456
8UU7|1|A|G|457
8UU7|1|A|A|458
8UU7|1|A|C|459
8UU7|1|A|C|460
8UU7|1|A|A|461
8UU7|1|A|U|462
8UU7|1|A|C|463

Current chains

Chain A

23S Ribosomal RNA

Nearby chains