HL_8UU7_018
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 8UU7|1|A|A|617
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU7_018 not in the Motif Atlas
- Homologous match to HL_4WF9_018
- Geometric discrepancy: 0.1024
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8UU7|1|A|U|609
8UU7|1|A|U|610
8UU7|1|A|U|611
8UU7|1|A|U|612
8UU7|1|A|G|613
8UU7|1|A|U|614
8UU7|1|A|A|615
8UU7|1|A|G|616
8UU7|1|A|A|617
8UU7|1|A|A|618
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein uL15
- Chain S
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein bL21
Coloring options: