HL_8UU7_025

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8UU7|1|A|U|873, 8UU7|1|A|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_025 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.1169

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

8UU7|1|A|U|872
8UU7|1|A|U|873
8UU7|1|A|U|874
8UU7|1|A|A|875
8UU7|1|A|G|876
8UU7|1|A|G|877

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL15