HL_8UU7_054

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_054 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3651

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8UU7|1|A|G|2336
8UU7|1|A|G|2337
8UU7|1|A|A|2338
8UU7|1|A|U|2339
8UU7|1|A|G|2340
8UU7|1|A|G|2341
8UU7|1|A|A|2342
8UU7|1|A|A|2343
8UU7|1|A|A|2344
8UU7|1|A|U|2345
8UU7|1|A|C|2346

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5