HL_8UU7_060

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

8UU7|1|A|G|2562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_060 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1466

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UU7|1|A|U|2561
8UU7|1|A|G|2562
8UU7|1|A|U|2563
8UU7|1|A|A|2564
8UU7|1|A|G|2565
8UU7|1|A|U|2566
8UU7|1|A|C|2567
8UU7|1|A|G|2568

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain v

GTPase HflX