HL_8UU8_004

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU8_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2405

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8UU8|1|A|U|136
8UU8|1|A|U|137
8UU8|1|A|U|138
8UU8|1|A|A|139
8UU8|1|A|G|140
8UU8|1|A|U|141
8UU8|1|A|C|142
8UU8|1|A|G|143

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23