8UU8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8UU8_001 | 1/A/67:74 | No text annotation | geometric HL_4P5J_004 NA | |
| HL_8UU8_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
| HL_8UU8_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_8UU8_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_8UU8_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_8UU8_006 | 1/A/196:203 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_8UU8_007 | 1/A/227:232 | No text annotation | homologous HL_7A0S_007 HL_51020.1 | |
| HL_8UU8_008 | 1/A/248:254 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8UU8_010 | 1/A/348:355 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_8UU8_011 | 1/A/362:366 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_8UU8_012 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8UU8_013 | 1/A/428:438 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8UU8_014 | 1/A/456:463 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.4 | |
| HL_8UU8_015 | 1/A/508:513 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8UU8_016 | 1/A/533:538 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_8UU8_017 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_8UU8_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_8UU8_019 | 1/A/654:662 | Anticodon loop related | geometric HL_4V9F_032 HL_68642.1 | |
| HL_8UU8_020 | 1/A/674:679 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8UU8_021 | 1/A/686:692 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8UU8_022 | 1/A/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_8UU8_023 | 1/A/790:799 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_8UU8_024 | 1/A/825:831 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_8UU8_025 | 1/A/872:877 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_8UU8_027 | 1/A/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_8UU8_028 | 1/A/1024:1031 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_8UU8_029 | 1/A/1110:1120 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_8UU8_030 | 1/A/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_8UU8_031 | 1/A/1267:1272 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_8UU8_032 | 1/A/1325:1333 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_8UU8_033 | 1/A/1368:1374 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_8UU8_034 | 1/A/1407:1412 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8UU8_035 | 1/A/1433:1442 | No text annotation | ||
| HL_8UU8_036 | 1/A/1500:1511 | No text annotation | ||
| HL_8UU8_037 | 1/A/1541:1547 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8UU8_039 | 1/A/1617:1620 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_8UU8_040 | 1/A/1661:1668 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8UU8_041 | 1/A/1679:1685 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8UU8_042 | 1/A/1740:1745 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8UU8_043 | 1/A/1768:1773 | GNRA | geometric HL_7A0S_062 HL_34789.1 | |
| HL_8UU8_044 | 1/A/1785:1789 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8UU8_045 | 1/A/1810:1820 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_8UU8_046 | 1/A/1839:1844 | GNRA | homologous HL_7RQB_046 NA | |
| HL_8UU8_047 | 1/A/1901:1906 | No text annotation | homologous HL_4WF9_045 NA | |
| HL_8UU8_048 | 1/A/1943:1953 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8UU8_049 | 1/A/1982:1990 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_8UU8_050 | 1/A/2060:2069 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8UU8_052 | 1/A/2242:2248 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8UU8_053 | 1/A/2281:2289 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_8UU8_054 | 1/A/2297:2309 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_8UU8_055 | 1/A/2335:2347 | No text annotation | ||
| HL_8UU8_056 | 1/A/2357:2364 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_8UU8_057 | 1/A/2388:2395 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_8UU8_058 | 1/A/2407:2412 | GNRA | homologous HL_7RQB_058 NA | |
| HL_8UU8_059 | 1/A/2437:2446 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_8UU8_060 | 1/A/2504:2512 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_8UU8_061 | 1/A/2561:2568 | GNRA variation | homologous HL_7A0S_060 HL_46665.1 | |
| HL_8UU8_062 | 1/A/2584:2590 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8UU8_063 | 1/A/2627:2632 | GNRA | homologous HL_7RQB_063 NA | |
| HL_8UU8_064 | 1/A/2691:2696 | GNRA | geometric HL_1U9S_004 NA | |
| HL_8UU8_065 | 1/A/2734:2739 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_12125.1 | |
| HL_8UU8_066 | 1/A/2778:2792 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8UU8_067 | 1/A/2827:2832 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_8UU8_068 | 1/A/2848:2856 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8UU8_069 | 1/A/2885:2890 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_8UU8_070 | 1/B/36:42 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_8UU8_071 | 1/B/84:88 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_8UU8_072 | 1/a/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_8UU8_074 | 1/a/157:162 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_8UU8_075 | 1/a/192:197 | No text annotation | ||
| HL_8UU8_076 | 1/a/215:224 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_8UU8_077 | 1/a/267:275 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_8UU8_078 | 1/a/304:309 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_8UU8_079 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8UU8_080 | 1/a/350:355 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_8UU8_081 | 1/a/387:392 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_8UU8_082 | 1/a/427:432 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_8UU8_083 | 1/a/470:479 | No text annotation | ||
| HL_8UU8_084 | 1/a/530:535 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_8UU8_085 | 1/a/625:631 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_8UU8_086 | 1/a/697:706 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_8UU8_087 | 1/a/734:739 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_8UU8_088 | 1/a/794:804 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8UU8_090 | 1/a/871:876 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_8UU8_091 | 1/a/906:911 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_8UU8_094 | 1/a/1085:1090 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_8UU8_095 | 1/a/1098:1105 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_8UU8_101 | 1/a/1523:1528 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_8UU8_105 | 1/x/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UU8_009 | Mini UNCG | ||
| HL_8UU8_026 | No text annotation | ||
| HL_8UU8_038 | No text annotation | ||
| HL_8UU8_051 | UNCG | ||
| HL_8UU8_073 | No text annotation | ||
| HL_8UU8_089 | GNRA | ||
| HL_8UU8_092 | No text annotation | ||
| HL_8UU8_093 | GNRA | ||
| HL_8UU8_096 | No text annotation | ||
| HL_8UU8_097 | GNRA | ||
| HL_8UU8_098 | No text annotation | ||
| HL_8UU8_099 | T-loop with 3 stacked bulged bases | ||
| HL_8UU8_100 | No text annotation | ||
| HL_8UU8_102 | No text annotation | ||
| HL_8UU8_103 | No text annotation | ||
| HL_8UU8_104 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8UU8_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_8UU8_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
| IL_8UU8_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8UU8_185 | 1/A/56:76, 1/A/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8UU8_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8UU8_005 | 1/A/185:186, 1/A/214:216 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_8UU8_006 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_8UU8_007 | 1/A/240:247, 1/A/255:261 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_8UU8_008 | 1/A/304:305, 1/A/409:412 | Major groove minor groove platform; mini C-loop | geometric IL_4V9F_068 IL_73108.1 | |
| IL_8UU8_009 | 1/A/310:315, 1/A/403:404 | No text annotation | ||
| IL_8UU8_010 | 1/A/318:327, 1/A/398:400 | No text annotation | ||
| IL_8UU8_011 | 1/A/335:337, 1/A/386:390 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8UU8_012 | 1/A/343:345, 1/A/358:359 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_8UU8_013 | 1/A/527:530, 1/A/541:554 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_8UU8_014 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8UU8_015 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_8UU8_016 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_8UU8_017 | 1/A/718:720, 1/A/852:854 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.1 | |
| IL_8UU8_018 | 1/A/720:724, 1/A/845:852 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_8UU8_019 | 1/A/743:744, 1/A/809:811 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_8UU8_020 | 1/A/748:749, 1/A/774:776 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_8UU8_021 | 1/A/749:753, 1/A/770:774 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_8UU8_022 | 1/A/784:786, 1/A/803:804 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_8UU8_023 | 1/A/821:823, 1/A/833:837 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8UU8_024 | 1/A/883:884, 1/A/986:988 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_8UU8_025 | 1/A/889:894, 1/A/979:981 | No text annotation | ||
| IL_8UU8_186 | 1/A/889:895, 1/A/977:981 | No text annotation | ||
| IL_8UU8_026 | 1/A/894:895, 1/A/977:979 | 90 degree turn | homologous IL_7A0S_024 IL_79144.1 | |
| IL_8UU8_027 | 1/A/898:899, 1/A/972:974 | Single bulged U | geometric IL_4KZD_001 IL_97561.1 | |
| IL_8UU8_028 | 1/A/903:909, 1/A/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_8UU8_029 | 1/A/909:910, 1/A/960:962 | Minor groove platform | homologous IL_7A0S_028 IL_34520.1 | |
| IL_8UU8_030 | 1/A/911:915, 1/A/956:959 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_8UU8_033 | 1/A/998:1000, 1/A/1009:1011 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.1 | |
| IL_8UU8_034 | 1/A/1040:1042, 1/A/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8UU8_035 | 1/A/1044:1048, 1/A/1199:1203 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_8UU8_036 | 1/A/1050:1057, 1/A/1196:1197 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_8UU8_037 | 1/A/1057:1059, 1/A/1195:1196 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8UU8_038 | 1/A/1064:1070, 1/A/1186:1190 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_8UU8_039 | 1/A/1070:1076, 1/A/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_8UU8_040 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_30229.1 | |
| IL_8UU8_041 | 1/A/1089:1097, 1/A/1154:1158 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_8UU8_042 | 1/A/1105:1108, 1/A/1122:1125 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_8UU8_043 | 1/A/1133:1137, 1/A/1146:1148 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_8UU8_044 | 1/A/1242:1244, 1/A/1292:1295 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_8UU8_045 | 1/A/1250:1252, 1/A/1284:1286 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.1 | |
| IL_8UU8_046 | 1/A/1253:1260, 1/A/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_8UU8_047 | 1/A/1264:1266, 1/A/1273:1275 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_8UU8_048 | 1/A/1307:1314, 1/A/2044:2050 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_8UU8_049 | 1/A/1354:1357, 1/A/1652:1653 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_8UU8_050 | 1/A/1363:1367, 1/A/1375:1377 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_8UU8_051 | 1/A/1395:1399, 1/A/1420:1424 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_8UU8_052 | 1/A/1401:1405, 1/A/1414:1418 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8UU8_053 | 1/A/1456:1458, 1/A/1637:1639 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 NA | |
| IL_8UU8_054 | 1/A/1459:1466, 1/A/1633:1636 | No text annotation | ||
| IL_8UU8_055 | 1/A/1467:1471, 1/A/1629:1632 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_8UU8_056 | 1/A/1482:1485, 1/A/1609:1613 | No text annotation | ||
| IL_8UU8_057 | 1/A/1487:1490, 1/A/1603:1607 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8UU8_058 | 1/A/1518:1521, 1/A/1571:1575 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8UU8_059 | 1/A/1525:1528, 1/A/1564:1567 | Double sheared | geometric IL_4LFB_060 IL_58355.1 | |
| IL_8UU8_060 | 1/A/1531:1533, 1/A/1554:1561 | No text annotation | ||
| IL_8UU8_061 | 1/A/1538:1540, 1/A/1548:1549 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8UU8_062 | 1/A/1700:1705, 1/A/2037:2039 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_8UU8_063 | 1/A/1712:1714, 1/A/2028:2030 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_8UU8_064 | 1/A/1715:1718, 1/A/2026:2027 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_8UU8_187 | 1/A/1715:1723, 1/A/2023:2027 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_8UU8_065 | 1/A/1718:1723, 1/A/2023:2026 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_8UU8_066 | 1/A/1735:1740, 1/A/1745:1751 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8UU8_067 | 1/A/1760:1765, 1/A/1776:1780 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8UU8_068 | 1/A/1803:1804, 1/A/2013:2015 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_8UU8_069 | 1/A/1831:1837, 1/A/1846:1854 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_8UU8_070 | 1/A/1870:1873, 1/A/1935:1936 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8UU8_071 | 1/A/1874:1875, 1/A/1931:1934 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8UU8_072 | 1/A/1879:1882, 1/A/1926:1927 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8UU8_073 | 1/A/1884:1888, 1/A/1920:1924 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_8UU8_074 | 1/A/1889:1893, 1/A/1915:1919 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_8UU8_075 | 1/A/1897:1900, 1/A/1907:1911 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8UU8_076 | 1/A/1966:1967, 1/A/1997:2000 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_8UU8_077 | 1/A/1967:1978, 1/A/1994:1997 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_8UU8_078 | 1/A/2083:2085, 1/A/2650:2651 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_8UU8_079 | 1/A/2087:2089, 1/A/2645:2648 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_8UU8_080 | 1/A/2100:2102, 1/A/2475:2476 | Single bulged U | homologous IL_4WF9_080 IL_97561.1 | |
| IL_8UU8_081 | 1/A/2103:2104, 1/A/2471:2474 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8UU8_082 | 1/A/2114:2116, 1/A/2269:2272 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8UU8_083 | 1/A/2130:2132, 1/A/2223:2225 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_01003.1 | |
| IL_8UU8_085 | 1/A/2137:2139, 1/A/2216:2218 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_8UU8_091 | 1/A/2235:2237, 1/A/2253:2254 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8UU8_092 | 1/A/2330:2332, 1/A/2350:2354 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.1 | |
| IL_8UU8_093 | 1/A/2383:2386, 1/A/2397:2400 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8UU8_094 | 1/A/2434:2436, 1/A/2447:2448 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_8UU8_095 | 1/A/2486:2487, 1/A/2531:2533 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_8UU8_096 | 1/A/2487:2488, 1/A/2529:2531 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_8UU8_097 | 1/A/2490:2492, 1/A/2526:2527 | Major groove platform | homologous IL_7A0S_085 IL_48076.7 | |
| IL_8UU8_098 | 1/A/2492:2494, 1/A/2522:2526 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.1 | |
| IL_8UU8_099 | 1/A/2499:2503, 1/A/2513:2517 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_8UU8_100 | 1/A/2540:2541, 1/A/2613:2615 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8UU8_101 | 1/A/2543:2545, 1/A/2607:2611 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_8UU8_102 | 1/A/2545:2546, 1/A/2604:2607 | No text annotation | geometric IL_4WF9_096 IL_44609.1 | |
| IL_8UU8_103 | 1/A/2555:2556, 1/A/2573:2576 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_8UU8_104 | 1/A/2624:2625, 1/A/2634:2636 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_8UU8_105 | 1/A/2669:2673, 1/A/2807:2815 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_8UU8_106 | 1/A/2685:2691, 1/A/2696:2701 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.5 | |
| IL_8UU8_107 | 1/A/2713:2717, 1/A/2758:2760 | C-loop | homologous IL_5J7L_347 NA | |
| IL_8UU8_108 | 1/A/2720:2724, 1/A/2751:2755 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_8UU8_109 | 1/A/2728:2729, 1/A/2744:2747 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.1 | |
| IL_8UU8_110 | 1/A/2770:2775, 1/A/2795:2800 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_8UU8_111 | 1/A/2867:2868, 1/A/2907:2909 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_8UU8_112 | 1/A/2872:2875, 1/A/2899:2903 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_8UU8_113 | 1/A/2876:2881, 1/A/2894:2898 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_8UU8_114 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_8UU8_115 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_8UU8_116 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.1 | |
| IL_8UU8_117 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_8UU8_118 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_8UU8_119 | 1/B/78:80, 1/B/92:94 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_8UU8_120 | 1/a/30:32, 1/a/560:561 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8UU8_121 | 1/a/44:45, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8UU8_122 | 1/a/47:52, 1/a/367:369 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8UU8_123 | 1/a/54:56, 1/a/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8UU8_124 | 1/a/63:66, 1/a/101:102 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_8UU8_125 | 1/a/67:70, 1/a/97:100 | No text annotation | ||
| IL_8UU8_126 | 1/a/127:130, 1/a/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_8UU8_127 | 1/a/131:135, 1/a/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_8UU8_128 | 1/a/143:145, 1/a/175:177 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_8UU8_129 | 1/a/146:152, 1/a/167:174 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8UU8_130 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_8UU8_131 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8UU8_132 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8UU8_133 | 1/a/375:377, 1/a/400:401 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8UU8_134 | 1/a/379:383, 1/a/397:398 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8UU8_135 | 1/a/383:384, 1/a/395:397 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_8UU8_136 | 1/a/417:424, 1/a/435:441 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_8UU8_137 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_8UU8_138 | 1/a/458:464, 1/a/485:491 | No text annotation | ||
| IL_8UU8_139 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_8UU8_140 | 1/a/523:529, 1/a/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8UU8_141 | 1/a/577:583, 1/a/889:890 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_8UU8_142 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_8UU8_143 | 1/a/602:604, 1/a/652:653 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8UU8_144 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_8UU8_145 | 1/a/612:613, 1/a/640:642 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_8UU8_146 | 1/a/613:620, 1/a/636:640 | No text annotation | geometric IL_5J7L_030 NA | |
| IL_8UU8_147 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_8UU8_148 | 1/a/665:666, 1/a/755:757 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_8UU8_149 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8UU8_193 | 1/a/681:685, 1/a/721:725 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_8UU8_194 | 1/a/690:696, 1/a/707:716 | No text annotation | geometric IL_4V88_508 NA | |
| IL_8UU8_151 | 1/a/691:696, 1/a/707:715 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_8UU8_152 | 1/a/782:786, 1/a/812:813 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8UU8_153 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_8UU8_154 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_8UU8_155 | 1/a/931:932, 1/a/1400:1402 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8UU8_156 | 1/a/934:936, 1/a/1397:1398 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_8UU8_174 | 1/a/1406:1408, 1/a/1509:1512 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8UU8_175 | 1/a/1408:1411, 1/a/1505:1509 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8UU8_176 | 1/a/1412:1414, 1/a/1502:1504 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_8UU8_177 | 1/a/1414:1416, 1/a/1499:1502 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_8UU8_178 | 1/a/1419:1421, 1/a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8UU8_179 | 1/a/1423:1426, 1/a/1489:1492 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8UU8_180 | 1/a/1431:1434, 1/a/1481:1484 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8UU8_181 | 1/a/1437:1442, 1/a/1474:1478 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_8UU8_182 | 1/a/1442:1444, 1/a/1472:1474 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
| IL_8UU8_183 | 1/a/1447:1450, 1/a/1467:1469 | No text annotation | geometric IL_8VTW_011 NA | |
| IL_8UU8_184 | 1/a/1452:1455, 1/a/1463:1465 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UU8_031 | Isolated cWS basepair | ||
| IL_8UU8_032 | No text annotation | ||
| IL_8UU8_084 | No text annotation | ||
| IL_8UU8_086 | No text annotation | ||
| IL_8UU8_188 | Isolated non-canonical cWW pair | ||
| IL_8UU8_087 | No text annotation | ||
| IL_8UU8_088 | No text annotation | ||
| IL_8UU8_089 | No text annotation | ||
| IL_8UU8_090 | Isolated non-canonical cWW pair | ||
| IL_8UU8_189 | Tandem non-canonical cWW pairs | ||
| IL_8UU8_190 | No text annotation | ||
| IL_8UU8_191 | No text annotation | ||
| IL_8UU8_192 | Isolated non-canonical cWW pair | ||
| IL_8UU8_150 | No text annotation | ||
| IL_8UU8_195 | No text annotation | ||
| IL_8UU8_157 | Minor groove platform | ||
| IL_8UU8_158 | Tandem non-canonical cWW pairs | ||
| IL_8UU8_159 | Minor groove platform | ||
| IL_8UU8_160 | No text annotation | ||
| IL_8UU8_161 | No text annotation | ||
| IL_8UU8_162 | Single bulged U | ||
| IL_8UU8_163 | Tandem non-canonical cWW pairs | ||
| IL_8UU8_196 | No text annotation | ||
| IL_8UU8_164 | No text annotation | ||
| IL_8UU8_165 | Isolated non-canonical cWW pair | ||
| IL_8UU8_166 | Minor groove platform | ||
| IL_8UU8_167 | Minor groove platform | ||
| IL_8UU8_168 | No text annotation | ||
| IL_8UU8_169 | No text annotation | ||
| IL_8UU8_197 | No text annotation | ||
| IL_8UU8_170 | No text annotation | ||
| IL_8UU8_171 | Double sheared with non-canonical cWW | ||
| IL_8UU8_172 | Single stack bend | ||
| IL_8UU8_173 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8UU8_016 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | homologous J3_7A0S_001 J3_68715.1 | |
| J3_8UU8_017 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_8UU8_001 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_8UU8_018 | 1/A/271:275, 1/A/294:301, 1/A/415:416 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8UU8_019 | 1/A/339:343, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_8UU8_002 | 1/A/729:735, 1/A/819:821, 1/A/837:840 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8UU8_003 | 1/A/744:746, 1/A/778:782, 1/A/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8UU8_004 | 1/A/1101:1103, 1/A/1127:1133, 1/A/1148:1150 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_8UU8_005 | 1/A/1342:1347, 1/A/1674:1676, 1/A/1688:1691 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_8UU8_006 | 1/A/1349:1353, 1/A/1654:1660, 1/A/1669:1672 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_8UU8_020 | 1/A/1388:1394, 1/A/1425:1429, 1/A/1446:1447 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_8UU8_021 | 1/A/1475:1479, 1/A/1616:1617, 1/A/1620:1625 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_8UU8_007 | 1/A/2124:2126, 1/A/2229:2234, 1/A/2255:2261 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_8UU8_022 | 1/A/2315:2317, 1/A/2417:2428, 1/A/2454:2460 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8UU8_008 | 1/A/2328:2330, 1/A/2354:2356, 1/A/2365:2370 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_8UU8_009 | 1/A/2550:2553, 1/A/2578:2580, 1/A/2594:2600 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_8UU8_010 | 1/A/2822:2824, 1/A/2835:2840, 1/A/2918:2922 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_8UU8_023 | 1/A/2843:2844, 1/A/2860:2865, 1/A/2911:2915 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_8UU8_024 | 1/B/9:14, 1/B/66:67, 1/B/105:107 | No text annotation | ||
| J3_8UU8_025 | 1/a/46:47, 1/a/369:375, 1/a/401:403 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8UU8_026 | 1/a/46:52, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_8UU8_027 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_8UU8_028 | 1/a/594:596, 1/a/659:663, 1/a/759:763 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8UU8_029 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_8UU8_011 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8UU8_033 | 1/a/1082:1083, 1/a/1092:1096, 1/a/1107:1111 | No text annotation | homologous J3_6CZR_024 NA | |
| J4_8UU8_001 | 1/A/270:271, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_8UU8_002 | 1/A/339:343, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_8UU8_003 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:702 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8UU8_004 | 1/A/1315:1320, 1/A/1338:1339, 1/A/1694:1697, 1/A/2042:2043 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_8UU8_005 | 1/A/1354:1358, 1/A/1382:1387, 1/A/1448:1449, 1/A/1646:1653 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_8UU8_006 | 1/A/1357:1358, 1/A/1382:1387, 1/A/1448:1449, 1/A/1646:1652 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_8UU8_007 | 1/A/1494:1496, 1/A/1515:1517, 1/A/1576:1581, 1/A/1593:1599 | No text annotation | ||
| J4_8UU8_008 | 1/A/1805:1809, 1/A/1821:1825, 1/A/1860:1863, 1/A/2008:2012 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8UU8_009 | 1/A/1866:1868, 1/A/1938:1939, 1/A/1957:1966, 1/A/2000:2005 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8UU8_010 | 1/A/2318:2322, 1/A/2376:2380, 1/A/2403:2405, 1/A/2414:2416 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8UU8_011 | 1/A/2676:2679, 1/A/2707:2709, 1/A/2764:2768, 1/A/2802:2804 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_8UU8_012 | 1/a/113:121, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_8UU8_013 | 1/a/142:143, 1/a/177:183, 1/a/206:212, 1/a/227:228 | No text annotation | ||
| J4_8UU8_014 | 1/a/583:585, 1/a/772:777, 1/a/818:829, 1/a/888:889 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_8UU8_016 | 1/x/7:10, 1/x/25:27, 1/x/43:49, 1/x/65:66 | tRNA junction | homologous J4_7E8O_002 NA | |
| J5_8UU8_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/177:179 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8UU8_002 | 1/A/270:275, 1/A/294:301, 1/A/415:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
| J5_8UU8_003 | 1/A/576:578, 1/A/603:607, 1/A/620:622, 1/A/1306:1307, 1/A/2050:2051 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_8UU8_004 | 1/A/627:632, 1/A/714:717, 1/A/855:858, 1/A/1241:1242, 1/A/1295:1301 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_8UU8_005 | 1/A/1723:1731, 1/A/1755:1756, 1/A/1784:1785, 1/A/1789:1797, 1/A/2021:2023 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_8UU8_006 | 1/A/2090:2097, 1/A/2479:2486, 1/A/2533:2540, 1/A/2615:2621, 1/A/2639:2644 | No text annotation | ||
| J5_8UU8_007 | 1/A/2107:2110, 1/A/2276:2279, 1/A/2291:2292, 1/A/2314:2315, 1/A/2460:2468 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_8UU8_008 | 1/a/36:39, 1/a/411:414, 1/a/444:449, 1/a/501:508, 1/a/553:556 | No text annotation | ||
| J5_8UU8_009 | 1/a/58:61, 1/a/104:111, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_8UU8_001 | 1/A/45:46, 1/A/180:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/472:479 | No text annotation | ||
| J6_8UU8_002 | 1/A/2107:2110, 1/A/2276:2279, 1/A/2291:2292, 1/A/2314:2317, 1/A/2417:2428, 1/A/2454:2468 | No text annotation | ||
| J7_8UU8_001 | 1/A/8:15, 1/A/570:576, 1/A/2051:2056, 1/A/2073:2076, 1/A/2658:2663, 1/A/2821:2822, 1/A/2922:2923 | No text annotation | ||
| J7_8UU8_003 | 1/A/863:868, 1/A/881:882, 1/A/989:992, 1/A/1017:1022, 1/A/1033:1037, 1/A/1209:1210, 1/A/1231:1236 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8UU8_036 | No text annotation | ||
| J3_8UU8_030 | No text annotation | ||
| J3_8UU8_031 | No text annotation | ||
| J3_8UU8_012 | No text annotation | ||
| J3_8UU8_032 | No text annotation | ||
| J3_8UU8_013 | No text annotation | ||
| J3_8UU8_014 | No text annotation | ||
| J3_8UU8_015 | No text annotation | ||
| J3_8UU8_034 | No text annotation | ||
| J3_8UU8_035 | No text annotation | ||
| J4_8UU8_015 | No text annotation | ||
| J7_8UU8_002 | No text annotation |
Coloring options: