HL_8UU8_026

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8UU8|1|A|U|942, 8UU8|1|A|A|943

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU8_026 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3013

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8UU8|1|A|G|927
8UU8|1|A|G|928
8UU8|1|A|U|942
8UU8|1|A|A|943
8UU8|1|A|C|944

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16