HL_8UU8_064

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU8_064 not in the Motif Atlas

Geometric match to HL_1U9S_004

Geometric discrepancy: 0.1534

The information below is about HL_1U9S_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UU8|1|A|C|2691
8UU8|1|A|G|2692
8UU8|1|A|A|2693
8UU8|1|A|G|2694
8UU8|1|A|A|2695
8UU8|1|A|G|2696

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain v

GTPase HflX