HL_8UU9_003

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

8UU9|1|A|G|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0787

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8UU9|1|A|G|122
8UU9|1|A|G|123
8UU9|1|A|G|124
8UU9|1|A|A|125
8UU9|1|A|A|126
8UU9|1|A|C|127

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL23