3D structure

PDB id
8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAUAAGA
Length
8 nucleotides
Bulged bases
8UU9|1|A|U|1004, 8UU9|1|A|G|1007
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UU9_027 not in the Motif Atlas
Homologous match to HL_7RQB_027
Geometric discrepancy: 0.1097
The information below is about HL_7RQB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

8UU9|1|A|U|1001
8UU9|1|A|G|1002
8UU9|1|A|A|1003
8UU9|1|A|U|1004
8UU9|1|A|A|1005
8UU9|1|A|A|1006
8UU9|1|A|G|1007
8UU9|1|A|A|1008

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain O
Large ribosomal subunit protein uL16

Coloring options:


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