HL_8UU9_029

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8UU9|1|A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_029 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1946

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UU9|1|A|C|1110
8UU9|1|A|U|1111
8UU9|1|A|U|1112
8UU9|1|A|A|1113
8UU9|1|A|G|1114
8UU9|1|A|A|1115
8UU9|1|A|A|1116
8UU9|1|A|G|1117
8UU9|1|A|C|1118
8UU9|1|A|A|1119
8UU9|1|A|G|1120

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain v

GTPase HflX