HL_8UU9_098
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU9_098 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.1508
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8UU9|1|a|C|1321
8UU9|1|a|U|1322
8UU9|1|a|G|1323
8UU9|1|a|C|1324
8UU9|1|a|A|1325
8UU9|1|a|A|1326
8UU9|1|a|C|1327
8UU9|1|a|U|1328
8UU9|1|a|C|1329
8UU9|1|a|G|1330
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
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