HL_8UU9_101

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8UU9|1|x|G|18, 8UU9|1|x|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_101 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.5991

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UU9|1|x|C|13
8UU9|1|x|A|14
8UU9|1|x|G|15
8UU9|1|x|G|18
8UU9|1|x|G|19
8UU9|1|x|U|20
8UU9|1|x|A|21
8UU9|1|x|G|22

Current chains

Chain x

pe/E Hybrid State Phenylalanine tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA