HL_8UU9_104

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

A(PSU)UGAA(MIA)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_104 not in the Motif Atlas

Homologous match to HL_5J8B_118

Geometric discrepancy: 0.2671

The information below is about HL_5J8B_118

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

54

Unit IDs

8UU9|1|x|A|31
8UU9|1|x|PSU|32
8UU9|1|x|U|33
8UU9|1|x|G|34
8UU9|1|x|A|35
8UU9|1|x|A|36
8UU9|1|x|MIA|37
8UU9|1|x|A|38
8UU9|1|x|PSU|39

Current chains

Chain x

pe/E Hybrid State Phenylalanine tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain i

Small ribosomal subunit protein uS9

Chain w

F-Stop mRNA