HL_8UVR_154

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVR_154 not in the Motif Atlas

Homologous match to HL_8VTW_043

Geometric discrepancy: 0.0651

The information below is about HL_8VTW_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56357.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8UVR|1|2A|C|1752
8UVR|1|2A|G|1753
8UVR|1|2A|C|1754
8UVR|1|2A|A|1755
8UVR|1|2A|G|1756

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2T

50S ribosomal protein L19