Motif HL_56357.1 Version HL_56357.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7Z4D_001 | 7Z4D | 0.2026 | 1 | A | sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | U | 37 | cWW | |
| 2 | HL_9BUN_001 | 9BUN | 0.1450 | 1 | A | RNA (48-MER) | G | 7 | G | 8 | A | 9 | A | 10 | C | 12 | cWW | |
| 3 | HL_7A0S_044 | 7A0S | 0.1346 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW | |
| 4 | HL_4V9F_046 | 4V9F | 0.0000 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW | |
| 5 | HL_8VTW_043 | 8VTW | 0.1032 | 0 | 1A | LSU rRNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW | |
| 6 | HL_4WF9_042 | 4WF9 | 0.1347 | 0 | X | LSU rRNA | C | 1779 | G | 1780 | C | 1781 | A | 1782 | G | 1783 | cWW | |
| 7 | HL_5J7L_177 | 5J7L | 0.1384 | 0 | DA | LSU rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW | |
| 8 | HL_4ZNP_001 | 4ZNP | 0.2989 | 1 | A | pfI Riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 31 | cWW | |
| 9 | HL_3IVK_002 | 3IVK | 0.3015 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 10 | HL_3HHN_007 | 3HHN | 0.3303 | 0 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 11 | HL_5MGA_001 | 5MGA | 0.5659 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | G | -9 | U | -8 | G | -6 | cWW | |
| 12 | HL_5XH7_001 | 5XH7 | 0.7423 | 1 | B | crRNA | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | |
| 13 | HL_5KK5_001 | 5KK5 | 0.8540 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 4 |
| CGAAG | 3 |
| GGAAAC | 2 |
| CUCUUG | 2 |
| AGAAAU | 1 |
| CUGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 4 |
| GAAA | 3 |
| GAA | 3 |
| UCUU | 2 |
| UGUU | 1 |
- Annotations
-
- (13)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.41 | Max 0.99
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