HL_8UVR_187

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

8UVR|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVR_187 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1054

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UVR|1|2a|G|259
8UVR|1|2a|G|260
8UVR|1|2a|U|261
8UVR|1|2a|A|262
8UVR|1|2a|A|263
8UVR|1|2a|U|264
8UVR|1|2a|G|265
8UVR|1|2a|G|266
8UVR|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20